J3_8ZHC_021
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|2702, 8ZHC|1|LA|A|2704
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_021 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0889
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8ZHC|1|LA|C|2663
8ZHC|1|LA|U|2664
8ZHC|1|LA|C|2665
*
8ZHC|1|LA|G|2689
8ZHC|1|LA|A|2690
8ZHC|1|LA|A|2691
*
8ZHC|1|LA|U|2700
8ZHC|1|LA|A|2701
8ZHC|1|LA|A|2702
8ZHC|1|LA|A|2703
8ZHC|1|LA|A|2704
8ZHC|1|LA|G|2705
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- Large ribosomal subunit protein uL18
- Chain LM
- Large ribosomal subunit protein uL5B
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Ta
- Transfer RNA; tRNA
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