J3_8ZHC_024

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHC_024 not in the Motif Atlas

Homologous match to J3_8P9A_065

Geometric discrepancy: 0.1409

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8ZHC|1|LA|C|3297
8ZHC|1|LA|A|3298
8ZHC|1|LA|U|3299
*
8ZHC|1|LA|A|3313
8ZHC|1|LA|G|3314
8ZHC|1|LA|A|3315
8ZHC|1|LA|U|3316
8ZHC|1|LA|G|3317
*
8ZHC|1|LA|C|3387
8ZHC|1|LA|U|3388
8ZHC|1|LA|G|3389

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A

Chain Lf

Large ribosomal subunit protein eL31A