J3_8ZHC_028
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8ZHC|1|S2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_028 not in the Motif Atlas
- Geometric match to J3_8P9A_069
- Geometric discrepancy: 0.0662
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZHC|1|S2|A|41
8ZHC|1|S2|G|42
8ZHC|1|S2|A|43
8ZHC|1|S2|U|44
8ZHC|1|S2|U|45
8ZHC|1|S2|A|46
8ZHC|1|S2|A|47
8ZHC|1|S2|G|48
*
8ZHC|1|S2|C|431
8ZHC|1|S2|G|432
8ZHC|1|S2|C|433
8ZHC|1|S2|G|434
8ZHC|1|S2|C|435
8ZHC|1|S2|A|436
8ZHC|1|S2|A|437
8ZHC|1|S2|A|438
8ZHC|1|S2|U|439
*
8ZHC|1|S2|A|464
8ZHC|1|S2|G|465
8ZHC|1|S2|U|466
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sc
- Small ribosomal subunit protein uS12A
Coloring options: