J3_8ZHC_035

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

8ZHC|1|S2|A|1614, 8ZHC|1|S2|C|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|S2|C|1161
8ZHC|1|S2|C|1162
8ZHC|1|S2|A|1163
8ZHC|1|S2|G|1164
*
8ZHC|1|S2|C|1581
8ZHC|1|S2|U|1582
8ZHC|1|S2|A|1583
8ZHC|1|S2|G|1584
8ZHC|1|S2|U|1585
8ZHC|1|S2|A|1586
8ZHC|1|S2|A|1587
*
8ZHC|1|S2|U|1609
8ZHC|1|S2|G|1610
8ZHC|1|S2|A|1611
8ZHC|1|S2|U|1612
8ZHC|1|S2|U|1613
8ZHC|1|S2|A|1614
8ZHC|1|S2|C|1615
8ZHC|1|S2|G|1616

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A