J3_8ZHC_040

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHC_040 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.2436

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8ZHC|1|S2|U|1293
8ZHC|1|S2|G|1294
*
8ZHC|1|S2|U|1303
8ZHC|1|S2|G|1304
8ZHC|1|S2|U|1305
8ZHC|1|S2|C|1306
*
8ZHC|1|S2|G|1318
8ZHC|1|S2|A|1319
8ZHC|1|S2|U|1320
8ZHC|1|S2|A|1321
8ZHC|1|S2|A|1322

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A

Chain SP

Small ribosomal subunit protein uS2A

Chain SR

Small ribosomal subunit protein uS5