J3_8ZTV_026

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8ZTV|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZTV_026 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1143

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8ZTV|1|a|C|1306
8ZTV|1|a|A|1307
8ZTV|1|a|A|1308
8ZTV|1|a|G|1309
*
8ZTV|1|a|C|1605
8ZTV|1|a|C|1606
8ZTV|1|a|C|1607
8ZTV|1|a|A|1608
8ZTV|1|a|A|1609
8ZTV|1|a|A|1610
8ZTV|1|a|C|1611
*
8ZTV|1|a|G|1620
8ZTV|1|a|U|1621
8ZTV|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34