J3_9AX8_010

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9AX8|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AX8_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0987

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9AX8|1|A|C|1306
9AX8|1|A|A|1307
9AX8|1|A|A|1308
9AX8|1|A|G|1309
*
9AX8|1|A|C|1605
9AX8|1|A|C|1606
9AX8|1|A|C|1607
9AX8|1|A|A|1608
9AX8|1|A|A|1609
9AX8|1|A|A|1610
9AX8|1|A|C|1611
*
9AX8|1|A|G|1620
9AX8|1|A|U|1621
9AX8|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34