J3_9AX8_016

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUC*GUAU*AUUUAAAG

Length

16 nucleotides

Bulged bases

9AX8|1|A|A|2518, 9AX8|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AX8_016 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.2949

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9AX8|1|A|C|2517
9AX8|1|A|A|2518
9AX8|1|A|U|2519
9AX8|1|A|C|2520
*
9AX8|1|A|G|2545
9AX8|1|A|U|2546
9AX8|1|A|A|2547
9AX8|1|A|U|2548
*
9AX8|1|A|A|2560
9AX8|1|A|U|2561
9AX8|1|A|U|2562
9AX8|1|A|U|2563
9AX8|1|A|A|2564
9AX8|1|A|A|2565
9AX8|1|A|A|2566
9AX8|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14