3D structure

PDB id
9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9AX8_027 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.1231
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9AX8|1|a|U|943
9AX8|1|a|G|944
9AX8|1|a|G|945
9AX8|1|a|A|946
*
9AX8|1|a|U|1235
9AX8|1|a|A|1236
9AX8|1|a|C|1237
*
9AX8|1|a|G|1337
9AX8|1|a|G|1338
9AX8|1|a|A|1339
9AX8|1|a|A|1340

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain m
30S ribosomal protein S13
Chain y
Transfer RNA; tRNA

Coloring options:


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