J3_9AXU_001

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUCAAG*CGAAG

Length

26 nucleotides

Bulged bases

9AXU|1|2|U|117, 9AXU|1|2|G|120, 9AXU|1|2|A|121, 9AXU|1|2|A|162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69230.1

Basepair signature

cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|C|113
9AXU|1|2|A|114
9AXU|1|2|A|115
9AXU|1|2|A|116
9AXU|1|2|U|117
9AXU|1|2|U|118
9AXU|1|2|U|119
9AXU|1|2|G|120
9AXU|1|2|A|121
9AXU|1|2|A|122
9AXU|1|2|A|123
*
9AXU|1|2|U|155
9AXU|1|2|A|156
9AXU|1|2|A|157
9AXU|1|2|U|158
9AXU|1|2|U|159
9AXU|1|2|U|160
9AXU|1|2|C|161
9AXU|1|2|A|162
9AXU|1|2|A|163
9AXU|1|2|G|164
*
9AXU|1|2|C|271
9AXU|1|2|G|272
9AXU|1|2|A|273
9AXU|1|2|A|274
9AXU|1|2|G|275

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein eL8

Chain X

Large ribosomal subunit protein eL13

Chain Z

Large ribosomal subunit protein eL15B

Chain t

Large ribosomal subunit protein uL29

Chain u

Large ribosomal subunit protein eL36B