J3_9AXU_005

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|A|377
9AXU|1|2|U|378
9AXU|1|2|G|379
9AXU|1|2|A|380
9AXU|1|2|A|381
9AXU|1|2|A|382
9AXU|1|2|A|383
9AXU|1|2|G|384
*
9AXU|1|2|C|411
9AXU|1|2|G|412
*
9AXU|1|4|C|27
9AXU|1|4|U|28

Current chains

Chain 2

28S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL4A

Chain k

Large ribosomal subunit protein uL24

Chain x

Large ribosomal subunit protein eL39