J3_9AXU_008

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

9AXU|1|2|A|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86133.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|U|513
9AXU|1|2|C|514
*
9AXU|1|2|G|612
9AXU|1|2|A|613
9AXU|1|2|G|614
9AXU|1|2|G|615
9AXU|1|2|A|616
9AXU|1|2|C|617
9AXU|1|2|U|618
9AXU|1|2|G|619
9AXU|1|2|C|620
9AXU|1|2|G|621
*
9AXU|1|2|C|631
9AXU|1|2|A|632
9AXU|1|2|A|633
9AXU|1|2|G|634
9AXU|1|2|G|635
9AXU|1|2|A|636

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL4A

Chain R

Large ribosomal subunit protein eL6

Chain S

Large ribosomal subunit protein uL30C

Chain q

Large ribosomal subunit protein eL32A