J3_9AZC_010

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9AZC|1|L5|A|1805, 9AZC|1|L5|U|1834

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AZC_010 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4115

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9AZC|1|L5|U|1726
9AZC|1|L5|U|1727
*
9AZC|1|L5|A|1802
9AZC|1|L5|G|1803
9AZC|1|L5|A|1804
9AZC|1|L5|A|1805
9AZC|1|L5|G|1806
*
9AZC|1|L5|C|1832
9AZC|1|L5|G|1833
9AZC|1|L5|U|1834
9AZC|1|L5|G|1835
9AZC|1|L5|G|1836
9AZC|1|L5|A|1837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29