J3_9AZC_018
3D structure
- PDB id
- 9AZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (Consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9AZC_018 not in the Motif Atlas
- Homologous match to J3_8CRE_018
- Geometric discrepancy: 0.1487
- The information below is about J3_8CRE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9AZC|1|L5|A|2598
9AZC|1|L5|G|2599
9AZC|1|L5|A|2600
9AZC|1|L5|A|2601
9AZC|1|L5|G|2602
*
9AZC|1|L5|C|2737
9AZC|1|L5|C|2738
*
9AZC|1|L5|G|2742
9AZC|1|L5|A|2743
9AZC|1|L5|A|2744
9AZC|1|L5|A|2745
9AZC|1|L5|A|2746
9AZC|1|L5|U|2747
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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