J3_9AZC_019

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9AZC|1|L5|G|4076

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AZC_019 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1355

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9AZC|1|L5|C|3937
9AZC|1|L5|G|3938
9AZC|1|L5|G|3939
*
9AZC|1|L5|C|4074
9AZC|1|L5|U|4075
9AZC|1|L5|G|4076
9AZC|1|L5|A|4077
9AZC|1|L5|C|4078
*
9AZC|1|L5|G|4168
9AZC|1|L5|G|4169
9AZC|1|L5|A|4170
9AZC|1|L5|C|4171
9AZC|1|L5|A|4172
9AZC|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15