J3_9AZC_023

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9AZC|1|L5|A|4464, 9AZC|1|L5|U|4465

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AZC_023 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.0678

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9AZC|1|L5|U|4463
9AZC|1|L5|A|4464
9AZC|1|L5|U|4465
9AZC|1|L5|C|4466
*
9AZC|1|L5|G|4491
9AZC|1|L5|U|4492
9AZC|1|L5|U|4493
*
9AZC|1|L5|A|4507
9AZC|1|L5|C|4508
9AZC|1|L5|U|4509
9AZC|1|L5|A|4510
9AZC|1|L5|A|4511
9AZC|1|L5|U|4512
9AZC|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23