J3_9AZC_035
3D structure
- PDB id
- 9AZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (Consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9AZC_035 not in the Motif Atlas
- Homologous match to J3_8P9A_076
- Geometric discrepancy: 0.1254
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9AZC|1|S2|C|1218
9AZC|1|S2|C|1219
9AZC|1|S2|A|1220
9AZC|1|S2|G|1221
*
9AZC|1|S2|C|1645
9AZC|1|S2|C|1646
9AZC|1|S2|A|1647
9AZC|1|S2|G|1648
9AZC|1|S2|U|1649
9AZC|1|S2|A|1650
9AZC|1|S2|A|1651
*
9AZC|1|S2|U|1673
9AZC|1|S2|G|1674
9AZC|1|S2|A|1675
9AZC|1|S2|U|1676
9AZC|1|S2|U|1677
9AZC|1|S2|A|1678
9AZC|1|S2|A|1679
9AZC|1|S2|G|1680
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain Sc
- 40S ribosomal protein S28
Coloring options: