J3_9AZC_037
3D structure
- PDB id
- 9AZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (Consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9AZC|1|S2|G|1256, 9AZC|1|S2|A|1258, 9AZC|1|S2|A|1260
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9AZC_037 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.0728
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9AZC|1|S2|C|1237
9AZC|1|S2|U|1238
9AZC|1|S2|U|1239
9AZC|1|S2|A|1240
9AZC|1|S2|A|1241
9AZC|1|S2|U|1242
9AZC|1|S2|U|1243
9AZC|1|S2|U|1244
*
9AZC|1|S2|G|1255
9AZC|1|S2|G|1256
9AZC|1|S2|G|1257
9AZC|1|S2|A|1258
9AZC|1|S2|A|1259
9AZC|1|S2|A|1260
9AZC|1|S2|C|1261
9AZC|1|S2|C|1262
9AZC|1|S2|U|1263
9AZC|1|S2|C|1264
9AZC|1|S2|A|1265
9AZC|1|S2|C|1266
*
9AZC|1|S2|G|1516
9AZC|1|S2|G|1517
9AZC|1|S2|C|1518
9AZC|1|S2|U|1519
9AZC|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: