J3_9AZM_001
3D structure
- PDB id
- 9AZM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human ribosome (Focused on 40S with SERBP1 CTD)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9AZM_001 not in the Motif Atlas
- Homologous match to J3_8P9A_076
- Geometric discrepancy: 0.121
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9AZM|1|S2|C|1218
9AZM|1|S2|C|1219
9AZM|1|S2|A|1220
9AZM|1|S2|G|1221
*
9AZM|1|S2|C|1645
9AZM|1|S2|C|1646
9AZM|1|S2|A|1647
9AZM|1|S2|G|1648
9AZM|1|S2|U|1649
9AZM|1|S2|A|1650
9AZM|1|S2|A|1651
*
9AZM|1|S2|U|1673
9AZM|1|S2|G|1674
9AZM|1|S2|A|1675
9AZM|1|S2|U|1676
9AZM|1|S2|U|1677
9AZM|1|S2|A|1678
9AZM|1|S2|A|1679
9AZM|1|S2|G|1680
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain Sc
- 40S ribosomal protein S28
Coloring options: