J3_9B00_009
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- 9B00|1|1A|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B00_009 not in the Motif Atlas
- Homologous match to J3_8VTW_009
- Geometric discrepancy: 0.0829
- The information below is about J3_8VTW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_90771.1
- Basepair signature
- cWW-F-cWW-tWH-F-F-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9B00|1|1A|C|2789
9B00|1|1A|A|2790
9B00|1|1A|C|2791
*
9B00|1|1A|G|2805
9B00|1|1A|G|2807
9B00|1|1A|U|2808
9B00|1|1A|A|2809
9B00|1|1A|A|2810
9B00|1|1A|G|2811
*
9B00|1|1A|C|2889
9B00|1|1A|G|2891
9B00|1|1A|A|2892
9B00|1|1A|G|2893
9B00|1|1A|G|2894
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1W
- 50S ribosomal protein L22
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