J3_9B00_035

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

9B00|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B00_035 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1206

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9B00|1|2a|C|1237
9B00|1|2a|A|1238
9B00|1|2a|A|1239
9B00|1|2a|U|1240
9B00|1|2a|G|1241
*
9B00|1|2a|C|1296
9B00|1|2a|C|1297
9B00|1|2a|C|1298
9B00|1|2a|A|1299
9B00|1|2a|G|1300
9B00|1|2a|U|1301
9B00|1|2a|U|1302
9B00|1|2a|C|1303
*
9B00|1|2a|G|1334
9B00|1|2a|C|1335
9B00|1|2a|C|1336
9B00|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx