J3_9B0S_010

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9B0S|1|L5|A|1805, 9B0S|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0S_010 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4259

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9B0S|1|L5|U|1726
9B0S|1|L5|U|1727
*
9B0S|1|L5|A|1802
9B0S|1|L5|G|1803
9B0S|1|L5|A|1804
9B0S|1|L5|A|1805
9B0S|1|L5|G|1806
*
9B0S|1|L5|C|1832
9B0S|1|L5|G|1833
9B0S|1|L5|U|1834
9B0S|1|L5|G|1835
9B0S|1|L5|G|1836
9B0S|1|L5|A|1837

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29