J3_9B0S_017

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0S_017 not in the Motif Atlas

Homologous match to J3_8P9A_087

Geometric discrepancy: 0.2478

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75962.2

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9B0S|1|L5|U|2575
9B0S|1|L5|G|2576
*
9B0S|1|L5|C|2585
9B0S|1|L5|G|2586
9B0S|1|L5|A|2587
9B0S|1|L5|C|2588
9B0S|1|L5|C|2589
*
9B0S|1|L5|G|2756
9B0S|1|L5|A|2757

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34