J3_9B0S_018

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0S_018 not in the Motif Atlas

Homologous match to J3_8CRE_018

Geometric discrepancy: 0.1532

The information below is about J3_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9B0S|1|L5|A|2598
9B0S|1|L5|G|2599
9B0S|1|L5|A|2600
9B0S|1|L5|A|2601
9B0S|1|L5|G|2602
*
9B0S|1|L5|C|2737
9B0S|1|L5|C|2738
*
9B0S|1|L5|G|2742
9B0S|1|L5|A|2743
9B0S|1|L5|A|2744
9B0S|1|L5|A|2745
9B0S|1|L5|A|2746
9B0S|1|L5|U|2747

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a