J3_9B0S_023

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9B0S|1|L5|A|4464, 9B0S|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0S_023 not in the Motif Atlas

Homologous match to J3_8CRE_023

Geometric discrepancy: 0.095

The information below is about J3_8CRE_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9B0S|1|L5|U|4463
9B0S|1|L5|A|4464
9B0S|1|L5|U|4465
9B0S|1|L5|C|4466
*
9B0S|1|L5|G|4491
9B0S|1|L5|U|4492
9B0S|1|L5|U|4493
*
9B0S|1|L5|A|4507
9B0S|1|L5|C|4508
9B0S|1|L5|U|4509
9B0S|1|L5|A|4510
9B0S|1|L5|A|4511
9B0S|1|L5|U|4512
9B0S|1|L5|A|4513

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23