J3_9B0S_042

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9B0S|1|l5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|l5|C|112
9B0S|1|l5|A|113
9B0S|1|l5|G|114
9B0S|1|l5|C|115
9B0S|1|l5|G|116
*
9B0S|1|l5|C|155
9B0S|1|l5|G|156
9B0S|1|l5|U|157
9B0S|1|l5|A|158
9B0S|1|l5|C|159
9B0S|1|l5|G|160
*
9B0S|1|l5|C|275
9B0S|1|l5|C|276
9B0S|1|l5|G|277
9B0S|1|l5|G|278

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lG

60S ribosomal protein L7a

Chain lL

Large ribosomal subunit protein eL13

Chain lN

60S ribosomal protein L15

Chain lh

60S ribosomal protein L35

Chain li

60S ribosomal protein L36