J3_9B0S_053

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9B0S|1|l5|U|2788, 9B0S|1|l5|A|2789, 9B0S|1|l5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0S_053 not in the Motif Atlas

Homologous match to J3_8CRE_014

Geometric discrepancy: 0.0808

The information below is about J3_8CRE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9B0S|1|l5|G|2402
9B0S|1|l5|A|2403
9B0S|1|l5|A|2404
9B0S|1|l5|G|2405
*
9B0S|1|l5|C|2785
9B0S|1|l5|C|2786
9B0S|1|l5|A|2787
9B0S|1|l5|U|2788
9B0S|1|l5|A|2789
9B0S|1|l5|U|2790
9B0S|1|l5|C|2791
*
9B0S|1|l5|G|2800
9B0S|1|l5|U|2801
9B0S|1|l5|C|2802

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lg

60S ribosomal protein L34

Chain lj

60S ribosomal protein L37

Chain ll

60S ribosomal protein L39