3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGG*CUGAC*GGACAG
Length
14 nucleotides
Bulged bases
9B0S|1|l5|G|4076
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B0S_059 not in the Motif Atlas
Geometric match to J3_5J7L_044
Geometric discrepancy: 0.1415
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn 3-way junction
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

9B0S|1|l5|C|3937
9B0S|1|l5|G|3938
9B0S|1|l5|G|3939
*
9B0S|1|l5|C|4074
9B0S|1|l5|U|4075
9B0S|1|l5|G|4076
9B0S|1|l5|A|4077
9B0S|1|l5|C|4078
*
9B0S|1|l5|G|4168
9B0S|1|l5|G|4169
9B0S|1|l5|A|4170
9B0S|1|l5|C|4171
9B0S|1|l5|A|4172
9B0S|1|l5|G|4173

Current chains

Chain l5
28S rRNA [Homo sapiens]

Nearby chains

Chain lA
60S ribosomal protein L8
Chain lG
60S ribosomal protein L7a
Chain lN
60S ribosomal protein L15
Chain li
60S ribosomal protein L36

Coloring options:


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