J3_9B0S_067
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 9B0S|1|l8|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B0S_067 not in the Motif Atlas
- Homologous match to J3_8CRE_027
- Geometric discrepancy: 0.1828
- The information below is about J3_8CRE_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9B0S|1|l8|A|44
9B0S|1|l8|C|45
*
9B0S|1|l8|G|58
9B0S|1|l8|A|59
9B0S|1|l8|G|60
9B0S|1|l8|A|61
9B0S|1|l8|A|62
9B0S|1|l8|U|63
9B0S|1|l8|U|64
*
9B0S|1|l8|A|95
9B0S|1|l8|C|96
9B0S|1|l8|A|97
9B0S|1|l8|C|98
9B0S|1|l8|U|99
Current chains
- Chain l8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain lX
- 60S ribosomal protein L23a
- Chain lh
- 60S ribosomal protein L35
- Chain lj
- 60S ribosomal protein L37
- Chain ll
- 60S ribosomal protein L39
Coloring options: