3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UUGAAAAG*CG*CA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B11_004 not in the Motif Atlas
Geometric match to J3_5J7L_036
Geometric discrepancy: 0.0936
The information below is about J3_5J7L_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

9B11|1|L5|U|380
9B11|1|L5|U|381
9B11|1|L5|G|382
9B11|1|L5|A|383
9B11|1|L5|A|384
9B11|1|L5|A|385
9B11|1|L5|A|386
9B11|1|L5|G|387
*
9B11|1|L5|C|414
9B11|1|L5|G|415
*
9B11|1|L8|C|19
9B11|1|L8|A|20

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LY
60S ribosomal protein L26
Chain Ll
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.283 s