J3_9B11_011

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B11_011 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2442

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9B11|1|L5|G|1969
9B11|1|L5|A|1970
9B11|1|L5|C|1971
*
9B11|1|L5|G|1995
9B11|1|L5|C|1996
9B11|1|L5|U|1997
9B11|1|L5|A|1998
9B11|1|L5|A|1999
9B11|1|L5|G|2000
9B11|1|L5|G|2001
*
9B11|1|L5|C|2016
9B11|1|L5|A|2017
9B11|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12