J3_9B11_019

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9B11|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B11_019 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1335

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9B11|1|L5|C|3937
9B11|1|L5|G|3938
9B11|1|L5|G|3939
*
9B11|1|L5|C|4074
9B11|1|L5|U|4075
9B11|1|L5|G|4076
9B11|1|L5|A|4077
9B11|1|L5|C|4078
*
9B11|1|L5|G|4168
9B11|1|L5|G|4169
9B11|1|L5|A|4170
9B11|1|L5|C|4171
9B11|1|L5|A|4172
9B11|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15