J3_9B11_026

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

9B11|1|L7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B11_026 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.0792

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

9B11|1|L7|C|9
9B11|1|L7|C|10
9B11|1|L7|A|11
9B11|1|L7|U|12
9B11|1|L7|A|13
9B11|1|L7|C|14
*
9B11|1|L7|G|65
9B11|1|L7|G|66
*
9B11|1|L7|U|109
9B11|1|L7|G|110

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21