J3_9B11_037
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9B11|1|S2|G|1256, 9B11|1|S2|A|1258, 9B11|1|S2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B11_037 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.0719
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9B11|1|S2|C|1237
9B11|1|S2|U|1238
9B11|1|S2|U|1239
9B11|1|S2|A|1240
9B11|1|S2|A|1241
9B11|1|S2|U|1242
9B11|1|S2|U|1243
9B11|1|S2|U|1244
*
9B11|1|S2|G|1255
9B11|1|S2|G|1256
9B11|1|S2|G|1257
9B11|1|S2|A|1258
9B11|1|S2|A|1259
9B11|1|S2|A|1260
9B11|1|S2|C|1261
9B11|1|S2|C|1262
9B11|1|S2|U|1263
9B11|1|S2|C|1264
9B11|1|S2|A|1265
9B11|1|S2|C|1266
*
9B11|1|S2|G|1516
9B11|1|S2|G|1517
9B11|1|S2|C|1518
9B11|1|S2|U|1519
9B11|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- eEF2
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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