3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CCGGAC*GGGUG*UUAGAUG
Length
18 nucleotides
Bulged bases
9B11|1|S2|G|1274, 9B11|1|S2|G|1507, 9B11|1|S2|U|1509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B11_038 not in the Motif Atlas
Homologous match to J3_8CRE_081
Geometric discrepancy: 0.1357
The information below is about J3_8CRE_081
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_87797.1
Basepair signature
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

9B11|1|S2|C|1272
9B11|1|S2|C|1273
9B11|1|S2|G|1274
9B11|1|S2|G|1275
9B11|1|S2|A|1276
9B11|1|S2|C|1277
*
9B11|1|S2|G|1320
9B11|1|S2|G|1321
9B11|1|S2|G|1322
9B11|1|S2|U|1323
9B11|1|S2|G|1324
*
9B11|1|S2|U|1504
9B11|1|S2|U|1505
9B11|1|S2|A|1506
9B11|1|S2|G|1507
9B11|1|S2|A|1508
9B11|1|S2|U|1509
9B11|1|S2|G|1510

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CB
eEF2
Chain SK
40S ribosomal protein S10
Chain Sd
40S ribosomal protein S29
Chain Sf
Ubiquitin-40S ribosomal protein S27a

Coloring options:


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