J3_9B24_002
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9B24|1|A|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_002 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.2788
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9B24|1|A|U|652
9B24|1|A|G|653
*
9B24|1|A|C|697
9B24|1|A|A|698
9B24|1|A|C|699
9B24|1|A|C|700
9B24|1|A|G|701
9B24|1|A|G|702
9B24|1|A|U|703
9B24|1|A|G|704
9B24|1|A|G|705
*
9B24|1|A|C|712
9B24|1|A|G|713
9B24|1|A|G|714
Current chains
- Chain A
- RNA (1528-MER)
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6
- Chain K
- Small ribosomal subunit protein uS11
- Chain O
- Small ribosomal subunit protein uS15
- Chain R
- Small ribosomal subunit protein bS18B
- Chain Z
- Large ribosomal subunit protein uL2
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