J3_9B24_008
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_008 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1972
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9B24|1|A|C|1043
9B24|1|A|G|1044
9B24|1|A|U|1045
9B24|1|A|C|1046
9B24|1|A|A|1047
9B24|1|A|G|1048
*
9B24|1|A|C|1087
9B24|1|A|G|1088
9B24|1|A|C|1089
9B24|1|A|A|1090
9B24|1|A|A|1091
9B24|1|A|C|1092
9B24|1|A|C|1093
*
9B24|1|A|G|1168
9B24|1|A|A|1169
9B24|1|A|U|1170
9B24|1|A|G|1171
9B24|1|A|A|1172
9B24|1|A|C|1173
9B24|1|A|G|1174
Current chains
- Chain A
- RNA (1528-MER)
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain E
- Small ribosomal subunit protein uS5
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14B
- Chain V
- Small ribosomal subunit protein uS2
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