J3_9B24_009

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

9B24|1|A|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B24_009 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2233

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9B24|1|A|U|1053
9B24|1|A|G|1054
*
9B24|1|A|U|1063
9B24|1|A|G|1064
9B24|1|A|U|1065
9B24|1|A|U|1066
*
9B24|1|A|G|1079
9B24|1|A|C|1080
9B24|1|A|A|1081
9B24|1|A|A|1082

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain V

Small ribosomal subunit protein uS2