J3_9B24_013

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B24_013 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.1493

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9B24|1|Y|G|27
9B24|1|Y|C|28
*
9B24|1|Y|G|562
9B24|1|Y|U|563
9B24|1|Y|G|564
9B24|1|Y|A|565
9B24|1|Y|A|566
9B24|1|Y|A|567
9B24|1|Y|A|568
9B24|1|Y|G|569
*
9B24|1|Y|C|596
9B24|1|Y|C|597

Current chains

Chain Y

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein uL24