J3_9B24_025
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 9B24|1|Y|C|2558, 9B24|1|Y|A|2560
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_025 not in the Motif Atlas
- Geometric match to J3_4WF9_008
- Geometric discrepancy: 0.3176
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9B24|1|Y|C|2519
9B24|1|Y|U|2520
9B24|1|Y|C|2521
*
9B24|1|Y|G|2545
9B24|1|Y|A|2546
9B24|1|Y|G|2547
*
9B24|1|Y|C|2556
9B24|1|Y|A|2557
9B24|1|Y|C|2558
9B24|1|Y|A|2559
9B24|1|Y|A|2560
9B24|1|Y|G|2561
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain U
- 5S ribosomal RNA; 5S rRNA
- Chain c
- Large ribosomal subunit protein uL5
- Chain k
- Large ribosomal subunit protein uL18
- Chain s
- Large ribosomal subunit protein bL27
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