J3_9B4Z_011

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9B4Z|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_011 not in the Motif Atlas

Geometric match to J3_8B0X_029

Geometric discrepancy: 0.0869

The information below is about J3_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9B4Z|1|AA|C|990
9B4Z|1|AA|U|991
9B4Z|1|AA|U|992
9B4Z|1|AA|G|993
9B4Z|1|AA|A|994
9B4Z|1|AA|C|995
9B4Z|1|AA|A|996
9B4Z|1|AA|U|997
*
9B4Z|1|AA|A|1044
9B4Z|1|AA|C|1045
9B4Z|1|AA|A|1046
9B4Z|1|AA|G|1047
*
9B4Z|1|AA|C|1210
9B4Z|1|AA|U|1211
9B4Z|1|AA|U|1212
9B4Z|1|AA|A|1213
9B4Z|1|AA|C|1214
9B4Z|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14