J3_9B4Z_013
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B4Z_013 not in the Motif Atlas
- Geometric match to J3_8B0X_010
- Geometric discrepancy: 0.0535
- The information below is about J3_8B0X_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9B4Z|1|AA|C|1063
9B4Z|1|AA|G|1064
9B4Z|1|AA|U|1065
9B4Z|1|AA|C|1066
9B4Z|1|AA|A|1067
9B4Z|1|AA|G|1068
*
9B4Z|1|AA|C|1107
9B4Z|1|AA|G|1108
9B4Z|1|AA|C|1109
9B4Z|1|AA|A|1110
9B4Z|1|AA|A|1111
9B4Z|1|AA|C|1112
9B4Z|1|AA|C|1113
*
9B4Z|1|AA|G|1187
9B4Z|1|AA|A|1188
9B4Z|1|AA|U|1189
9B4Z|1|AA|G|1190
9B4Z|1|AA|A|1191
9B4Z|1|AA|C|1192
9B4Z|1|AA|G|1193
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AE
- 30S ribosomal protein S5
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
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