J3_9B4Z_031

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9B4Z|1|BA|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_031 not in the Motif Atlas

Geometric match to J3_8B0X_021

Geometric discrepancy: 0.0518

The information below is about J3_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9B4Z|1|BA|C|2091
9B4Z|1|BA|U|2092
9B4Z|1|BA|G|2093
*
9B4Z|1|BA|C|2196
9B4Z|1|BA|U|2197
9B4Z|1|BA|A|2198
9B4Z|1|BA|A|2199
9B4Z|1|BA|C|2200
*
9B4Z|1|BA|G|2223
9B4Z|1|BA|G|2224
9B4Z|1|BA|A|2225
9B4Z|1|BA|C|2226
9B4Z|1|BA|A|2227
9B4Z|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28