J3_9B4Z_034

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9B4Z|1|BA|A|2518, 9B4Z|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_034 not in the Motif Atlas

Geometric match to J3_8B0X_023

Geometric discrepancy: 0.0479

The information below is about J3_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9B4Z|1|BA|C|2517
9B4Z|1|BA|A|2518
9B4Z|1|BA|U|2519
9B4Z|1|BA|C|2520
*
9B4Z|1|BA|G|2545
9B4Z|1|BA|U|2546
9B4Z|1|BA|A|2547
*
9B4Z|1|BA|U|2561
9B4Z|1|BA|U|2562
9B4Z|1|BA|U|2563
9B4Z|1|BA|A|2564
9B4Z|1|BA|A|2565
9B4Z|1|BA|A|2566
9B4Z|1|BA|G|2567

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14