J3_9B50_005
3D structure
- PDB id
- 9B50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9B50|1|AA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B50_005 not in the Motif Atlas
- Geometric match to J3_8B0X_003
- Geometric discrepancy: 0.0584
- The information below is about J3_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9B50|1|AA|U|672
9B50|1|AA|A|673
*
9B50|1|AA|U|717
9B50|1|AA|A|718
9B50|1|AA|C|719
9B50|1|AA|C|720
9B50|1|AA|G|721
9B50|1|AA|G|722
9B50|1|AA|U|723
9B50|1|AA|G|724
9B50|1|AA|G|725
*
9B50|1|AA|C|732
9B50|1|AA|G|733
9B50|1|AA|G|734
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AK
- 30S ribosomal protein S11
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
- Chain AU
- 30S ribosomal protein S21
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