J3_9B50_006

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9B50|1|AA|U|871, 9B50|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_006 not in the Motif Atlas

Geometric match to J3_8B0X_004

Geometric discrepancy: 0.0477

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9B50|1|AA|C|826
9B50|1|AA|U|827
9B50|1|AA|U|828
9B50|1|AA|G|829
*
9B50|1|AA|C|857
9B50|1|AA|G|858
9B50|1|AA|G|859
9B50|1|AA|A|860
9B50|1|AA|G|861
*
9B50|1|AA|C|868
9B50|1|AA|G|869
9B50|1|AA|U|870
9B50|1|AA|U|871
9B50|1|AA|A|872
9B50|1|AA|A|873
9B50|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21