J3_9B50_007

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_007 not in the Motif Atlas

Geometric match to J3_8B0X_005

Geometric discrepancy: 0.0563

The information below is about J3_8B0X_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9B50|1|AA|C|936
9B50|1|AA|A|937
9B50|1|AA|A|938
9B50|1|AA|G|939
*
9B50|1|AA|C|1344
9B50|1|AA|U|1345
9B50|1|AA|A|1346
9B50|1|AA|G|1347
9B50|1|AA|U|1348
9B50|1|AA|A|1349
9B50|1|AA|A|1350
*
9B50|1|AA|U|1372
9B50|1|AA|G|1373
9B50|1|AA|A|1374
9B50|1|AA|A|1375
9B50|1|AA|U|1376
9B50|1|AA|A|1377
9B50|1|AA|C|1378
9B50|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9