J3_9B50_010

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9B50|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_010 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.0948

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9B50|1|AA|C|990
9B50|1|AA|U|991
9B50|1|AA|U|992
9B50|1|AA|G|993
*
9B50|1|AA|C|1045
9B50|1|AA|A|1046
9B50|1|AA|G|1047
*
9B50|1|AA|C|1210
9B50|1|AA|U|1211
9B50|1|AA|U|1212
9B50|1|AA|A|1213
9B50|1|AA|C|1214
9B50|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14