3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
9B50|1|AA|U|1240, 9B50|1|AA|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B50_017 not in the Motif Atlas
Geometric match to J3_8B0X_013
Geometric discrepancy: 0.1228
The information below is about J3_8B0X_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03192.1
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
Number of instances in this motif group
5

Unit IDs

9B50|1|AA|C|1237
9B50|1|AA|A|1238
9B50|1|AA|A|1239
9B50|1|AA|U|1240
9B50|1|AA|G|1241
*
9B50|1|AA|C|1296
9B50|1|AA|G|1297
9B50|1|AA|U|1298
9B50|1|AA|A|1299
9B50|1|AA|G|1300
9B50|1|AA|U|1301
9B50|1|AA|C|1302
9B50|1|AA|C|1303
*
9B50|1|AA|G|1334
9B50|1|AA|U|1335
9B50|1|AA|C|1336
9B50|1|AA|G|1337

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AG
30S ribosomal protein S7
Chain AM
30S ribosomal protein S13

Coloring options:


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