J3_9B50_019

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

9B50|1|BA|A|504, 9B50|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_019 not in the Motif Atlas

Geometric match to J3_8B0X_032

Geometric discrepancy: 0.0339

The information below is about J3_8B0X_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9B50|1|BA|G|30
9B50|1|BA|C|31
*
9B50|1|BA|G|474
9B50|1|BA|C|475
9B50|1|BA|G|476
9B50|1|BA|A|477
9B50|1|BA|A|478
9B50|1|BA|A|479
9B50|1|BA|A|480
9B50|1|BA|G|481
9B50|1|BA|A|482
9B50|1|BA|A|483
9B50|1|BA|C|484
*
9B50|1|BA|G|496
9B50|1|BA|A|497
9B50|1|BA|G|498
9B50|1|BA|U|499
9B50|1|BA|G|500
9B50|1|BA|A|501
9B50|1|BA|A|502
9B50|1|BA|A|503
9B50|1|BA|A|504
9B50|1|BA|A|505
9B50|1|BA|G|506
9B50|1|BA|A|507
9B50|1|BA|A|508
9B50|1|BA|C|509
9B50|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24